Bradley E. Bernstein, M.D., Ph.D.

Bradley Bernstein, M.D., Ph.D.

Chair of Cancer Biology (Dana-Farber Cancer Institute)
Richard and Nancy Lubin Family Chair (DFCI)
Professor of Pathology (HMS)
Professor of Cell Biology (HMS)
LC-8313, 450 Brookline Avenue

Bradley Bernstein, M.D., Ph.D. is the Chair of Cancer Biology at the Dana-Farber Cancer Institute, where he holds the Richard and Nancy Lubin Family Chair. He is also the Director of the Gene Regulation Observatory at the Broad Institute, a Professor of Pathology and a Professor of Cell Biology at Harvard Medical School, and an Investigator in Harvard’s Ludwig Institute.

Dr. Bernstein’s research focuses on epigenetic gene regulation. The Bernstein Lab studies how gene activity is controlled by noncoding regulatory elements such as ‘enhancers’, and by the way the genes are packaged into chromatin. His work is notable for the discovery of ‘bivalent domains’, a signature chromatin state consisting of opposing histone modifications that poise master genes for alternate fates. His characterization of bivalent chromatin and associated regulatory factors in stem cells was a key early demonstration of the mechanistic impact of chromatin on mammalian development. His subsequent work as a leader of the NIH’s ENCODE consortium revealed that the vast ‘noncoding’ portions of the human genome, which had previously been dismissed as ‘junk’, are in fact packed with sequence elements that control gene activity.

Dr. Bernstein’s second major area of contribution is cancer epigenetics. He showed that DNA methylation can activate oncogenes by disrupting genomic insulators, an entirely unexpected discovery given that methylation had been so closely tied to repression. This finding explains how certain tumors can sustain potent oncogenic signaling in the absence of canonical mutations. His group has also uncovered epigenetic mechanisms that underlie tumor cell self-renewal, drug tolerance and immune evasion.

Dr. Bernstein received his B.S. from Yale University in 1992 and his M.D. and Ph.D. from the University of Washington in 1999, before completing a residency in clinical pathology at Brigham and Women’s Hospital and postdoctoral research at Harvard University.

Dana-Farber Cancer Institute

Cancer Biology/LC-8313

450 Brookline Avenue

Boston, MA 02215

Office: 617-632-5160

Molecular biology. Genetic events that shape the cancer epigenome.
Authors: Authors: Ryan RJ, Bernstein BE.
Science
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A tell-tail sign of chromatin: histone mutations drive pediatric glioblastoma.
Authors: Authors: Rheinbay E, Louis DN, Bernstein BE, Suvà ML.
Cancer Cell
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DNA-protein interactions in high definition.
Authors: Authors: Mendenhall EM, Bernstein BE.
Genome Biol
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Histone H2A mono-ubiquitination is a crucial step to mediate PRC1-dependent repression of developmental genes to maintain ES cell identity.
Authors: Authors: Endoh M, Endo TA, Endoh T, Isono K, Sharif J, Ohara O, Toyoda T, Ito T, Eskeland R, Bickmore WA, Vidal M, Bernstein BE, Koseki H.
PLoS Genet
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Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.
Authors: Authors: Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, Durham T, Zhang X, Donaghey J, Epstein CB, Regev A, Bernstein BE.
Cell
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Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.
Authors: Authors: Ziller MJ, Müller F, Liao J, Zhang Y, Gu H, Bock C, Boyle P, Epstein CB, Bernstein BE, Lengauer T, Gnirke A, Meissner A.
PLoS Genet
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Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq.
Authors: Authors: Adli M, Bernstein BE.
Nat Protoc
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Epstein-Barr virus exploits intrinsic B-lymphocyte transcription programs to achieve immortal cell growth.
Authors: Authors: Zhao B, Zou J, Wang H, Johannsen E, Peng CW, Quackenbush J, Mar JC, Morton CC, Freedman ML, Blacklow SC, Aster JC, Bernstein BE, Kieff E.
Proc Natl Acad Sci U S A
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Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells.
Authors: Authors: Wang H, Zou J, Zhao B, Johannsen E, Ashworth T, Wong H, Pear WS, Schug J, Blacklow SC, Arnett KL, Bernstein BE, Kieff E, Aster JC.
Proc Natl Acad Sci U S A
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Mapping and analysis of chromatin state dynamics in nine human cell types.
Authors: Authors: Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE.
Nature
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