Steven Gygi, Ph.D.

Steven Gygi, Ph.D.

Professor of Cell Biology (HMS)
C-523C

Steven Gygi, Ph.D., received his Ph.D. from the University of Utah in Pharmacology and Toxicology performing small molecule mass spectrometry.  He went on to pursue postdoctoral work with Ruedi Aebersold at the University of Washington in 1996.  A revolution in biological mass spectrometry was occurring which allowed for the measurement of protein expression levels and a new field, Proteomics, was born.  In 2000, Dr. Gygi moved to Harvard Medical School and joined the Department of Cell Biology.  Currently, he is the faculty director of two MS core facilities (Taplin Biological MS Facility, and the Thermo Fisher Center for Multiplexed Proteomics—TCMP@HMS).

Research in the Gygi lab centers around developing and applying new technologies in the field of mass spectrometry-based proteomics.  These include the systematic and proteome-wide measurements of many protein properties including their expression levels, modification states, structure, localization, function, and interactions.  For example, the Gygi lab, together with the Harper lab at HMS, is creating a genome-scale map of the protein-protein interaction landscape in cells (termed BioPlex).  In addition, sample multiplexing techniques like Tandem Mass Tags (TMT) are being improved to allow up to 16 proteomics samples to be analyzed simultaneously using high resolution mass spectrometry.

Harvard Medical School

Dept. of Cell Biology, C-523B

240 Longwood Avenue

Boston, MA 02115

DAGBagM: learning directed acyclic graphs of mixed variables with an application to identify protein biomarkers for treatment response in ovarian cancer.
Authors: Authors: Chowdhury S, Wang R, Yu Q, Huntoon CJ, Karnitz LM, Kaufmann SH, Gygi SP, Birrer MJ, Paulovich AG, Peng J, Wang P.
BMC Bioinformatics
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A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.
Authors: Authors: Feng P, Wu X, Erramilli SK, Paulo JA, Knejski P, Gygi SP, Kossiakoff AA, Rapoport TA.
Nature
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Time-resolved proximity labeling of protein networks associated with ligand-activated EGFR.
Authors: Authors: Perez Verdaguer M, Zhang T, Surve S, Paulo JA, Wallace C, Watkins SC, Gygi SP, Sorkin A.
Cell Rep
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Author Correction: Defining the consequences of genetic variation on a proteome-wide scale.
Authors: Authors: Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP.
Nature
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ß Cell-specific deletion of Zfp148 improves nutrient-stimulated ß cell Ca2+ responses.
Authors: Authors: Emfinger CH, de Klerk E, Schueler KL, Rabaglia ME, Stapleton DS, Simonett SP, Mitok KA, Wang Z, Liu X, Paulo JA, Yu Q, Cardone RL, Foster HR, Lewandowski SL, Perales JC, Kendziorski CM, Gygi SP, Kibbey RG, Keller MP, Hebrok M, Merrins MJ, Attie AD.
JCI Insight
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Profiling Yeast Deletion Strains Using Sample Multiplexing and Network-Based Analyses.
Authors: Authors: Liu X, Li J, Gygi SP, Paulo JA.
J Proteome Res
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CDC7-independent G1/S transition revealed by targeted protein degradation.
Authors: Authors: Suski JM, Ratnayeke N, Braun M, Zhang T, Strmiska V, Michowski W, Can G, Simoneau A, Snioch K, Cup M, Sullivan CM, Wu X, Nowacka J, Branigan TB, Pack LR, DeCaprio JA, Geng Y, Zou L, Gygi SP, Walter JC, Meyer T, Sicinski P.
Nature
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Rixosomal RNA degradation contributes to silencing of Polycomb target genes.
Authors: Authors: Zhou H, Stein CB, Shafiq TA, Shipkovenska G, Kalocsay M, Paulo JA, Zhang J, Luo Z, Gygi SP, Adelman K, Moazed D.
Nature
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Assessing interference in isobaric tag-based sample multiplexing using an 18-plex interference standard.
Authors: Authors: Navarrete-Perea J, Liu X, Rad R, Gygi JP, Gygi SP, Paulo JA.
Proteomics
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Functional mapping of PHF6 complexes in chromatin remodeling, replication dynamics and DNA repair.
Authors: Authors: Alvarez S, da Silva Almeida A, Albero R, Biswas M, Barreto-Galvez A, Gunning TS, Shaikh A, Aparicio T, Wendorff AA, Piovan E, Van Vlierberghe P, Gygi S, Gautier J, Madireddy A, Ferrando AA.
Blood
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