Bradley E. Bernstein, M.D., Ph.D.

Bradley Bernstein, M.D., Ph.D.

Chair of Cancer Biology (Dana-Farber Cancer Institute)
Richard and Nancy Lubin Family Chair (DFCI)
Professor of Pathology (HMS)
Professor of Cell Biology (HMS)
LC-8313, 450 Brookline Avenue

Bradley Bernstein, M.D., Ph.D. is the Chair of Cancer Biology at the Dana-Farber Cancer Institute, where he holds the Richard and Nancy Lubin Family Chair. He is also the Director of the Gene Regulation Observatory at the Broad Institute, a Professor of Pathology and a Professor of Cell Biology at Harvard Medical School, and an Investigator in Harvard’s Ludwig Institute.

Dr. Bernstein’s research focuses on epigenetic gene regulation. The Bernstein Lab studies how gene activity is controlled by noncoding regulatory elements such as ‘enhancers’, and by the way the genes are packaged into chromatin. His work is notable for the discovery of ‘bivalent domains’, a signature chromatin state consisting of opposing histone modifications that poise master genes for alternate fates. His characterization of bivalent chromatin and associated regulatory factors in stem cells was a key early demonstration of the mechanistic impact of chromatin on mammalian development. His subsequent work as a leader of the NIH’s ENCODE consortium revealed that the vast ‘noncoding’ portions of the human genome, which had previously been dismissed as ‘junk’, are in fact packed with sequence elements that control gene activity.

Dr. Bernstein’s second major area of contribution is cancer epigenetics. He showed that DNA methylation can activate oncogenes by disrupting genomic insulators, an entirely unexpected discovery given that methylation had been so closely tied to repression. This finding explains how certain tumors can sustain potent oncogenic signaling in the absence of canonical mutations. His group has also uncovered epigenetic mechanisms that underlie tumor cell self-renewal, drug tolerance and immune evasion.

Dr. Bernstein received his B.S. from Yale University in 1992 and his M.D. and Ph.D. from the University of Washington in 1999, before completing a residency in clinical pathology at Brigham and Women’s Hospital and postdoctoral research at Harvard University.

Dana-Farber Cancer Institute

Cancer Biology/LC-8313

450 Brookline Avenue

Boston, MA 02215

Office: 617-632-5160

Locus-specific editing of histone modifications at endogenous enhancers.
Authors: Authors: Mendenhall EM, Williamson KE, Reyon D, Zou JY, Ram O, Joung JK, Bernstein BE.
Nat Biotechnol
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Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.
Authors: Authors: Maeder ML, Angstman JF, Richardson ME, Linder SJ, Cascio VM, Tsai SQ, Ho QH, Sander JD, Reyon D, Bernstein BE, Costello JF, Wilkinson MF, Joung JK.
Nat Biotechnol
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Deletion of Asxl1 results in myelodysplasia and severe developmental defects in vivo.
Authors: Authors: Abdel-Wahab O, Gao J, Adli M, Dey A, Trimarchi T, Chung YR, Kuscu C, Hricik T, Ndiaye-Lobry D, Lafave LM, Koche R, Shih AH, Guryanova OA, Kim E, Li S, Pandey S, Shin JY, Telis L, Liu J, Bhatt PK, Monette S, Zhao X, Mason CE, Park CY, Bernstein BE, Aifantis I, Levine RL.
J Exp Med
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In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites.
Authors: Authors: Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK.
Nucleic Acids Res
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SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing.
Authors: Authors: Isono K, Endo TA, Ku M, Yamada D, Suzuki R, Sharif J, Ishikura T, Toyoda T, Bernstein BE, Koseki H.
Dev Cell
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Charting a dynamic DNA methylation landscape of the human genome.
Authors: Authors: Ziller MJ, Gu H, Müller F, Donaghey J, Tsai LT, Kohlbacher O, De Jager PL, Rosen ED, Bennett DA, Bernstein BE, Gnirke A, Meissner A.
Nature
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An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma.
Authors: Authors: Rheinbay E, Suvà ML, Gillespie SM, Wakimoto H, Patel AP, Shahid M, Oksuz O, Rabkin SD, Martuza RL, Rivera MN, Louis DN, Kasif S, Chi AS, Bernstein BE.
Cell Rep
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Transcriptional and epigenetic dynamics during specification of human embryonic stem cells.
Authors: Authors: Gifford CA, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, Shalek AK, Kelley DR, Shishkin AA, Issner R, Zhang X, Coyne M, Fostel JL, Holmes L, Meldrim J, Guttman M, Epstein C, Park H, Kohlbacher O, Rinn J, Gnirke A, Lander ES, Bernstein BE, Meissner A.
Cell
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Epigenetic reprogramming in cancer.
Authors: Authors: Suvà ML, Riggi N, Bernstein BE.
Science
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Genome-wide chromatin state transitions associated with developmental and environmental cues.
Authors: Authors: Zhu J, Adli M, Zou JY, Verstappen G, Coyne M, Zhang X, Durham T, Miri M, Deshpande V, De Jager PL, Bennett DA, Houmard JA, Muoio DM, Onder TT, Camahort R, Cowan CA, Meissner A, Epstein CB, Shoresh N, Bernstein BE.
Cell
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